PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G158800.3
Common NameB456_005G158800, LOC105794392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 475aa    MW: 52232.3 Da    PI: 5.2747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G158800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011121143123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+Cg s+++ ++   H  t+
  Gorai.005G158800.3 121 FECPICGASYRSEEEVSIHVETC 143
                         89*****************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd092127.63E-14176234No hitNo description
SuperFamilySSF1435031.83E-17187250IPR018997PUB domain
SMARTSM005801.5E-19188255IPR018997PUB domain
PfamPF094096.5E-16188261IPR018997PUB domain
SuperFamilySSF542364.65E-13335449IPR029071Ubiquitin-related domain
PROSITE profilePS5003311.631364448IPR001012UBX domain
Gene3DG3DSA:3.10.20.902.7E-7364447No hitNo description
PfamPF007895.6E-5365414IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSEMKDKLKG FMKKVNTQFS SSSSSSGKFK GQGRVLGSSS SSGPVNPILT RPSPIPNPAP  60
SSSSSNSKPV LPSKPPVSDQ NKPSSNSNPE PNHKTGSGFD PYDSFITSSK VSKNGFTLNV  120
FECPICGASY RSEEEVSIHV ETCVNNTNSL DRKGTDDESG SNETALEESR GEVEVRVSSF  180
LSGKPAEGSI EVVLKLLRNI VKEPGNDKFR KLRMSNPKIR EAIGEVAGGV ELLEFVGFEL  240
EEEGGEMWAV MDVPKEEQIS VISKAIMLLE PGNMEKFKKS ENISPTASPE KEETVESKKI  300
DRKIRVFFSV PESVAAKIEL PDSFYNLSSE ELKREAEMRK KKIADSQLLI PKSYKEKQAK  360
AARRKYRRTI IRIQFPDGVV LQGEFAPWEP TSALYEFVSS ALKEPCLEFE LLDPVIVKLR  420
VIPSFPAAGE KGRTLEEEDL VPSALIRFKP VETDSVVFTG LSNELLEISE PLVN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479004.10.0PREDICTED: plant UBX domain-containing protein 2-like isoform X1
RefseqXP_012479005.10.0PREDICTED: plant UBX domain-containing protein 2-like isoform X1
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLA0A0D2RMC80.0A0A0D2RMC8_G
STRINGPOPTR_0008s13320.10.0(Populus trichocarpa)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]